plotmap

object

logical. If <code>TRUE</code>, then highlight final clusters after outlier identification. If <code>FALSE</code>, then highlight initial
clusters prior to outlier identification. Default is <code>TRUE</code>.

final

Number between 0 and 1 to change transparency of dots in the map. Default is 1.

logical. If <code>TRUE</code> then plot t-SNE map, else plot Fruchterman-Rheingold layout.

size of data points. Default value is 0.5.

This functions plots a two-dimensional t-SNE map or a Fruchterman-Rheingold graph layout
of the singe-cell transcriptome data.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Gr<c3><bc>n D. (2018) <DOI:10.1038/nmeth.4662>.

plotmap: Plotting a t-SNE map

Description

Usage

Arguments

Value