plotPearsonRes

This function plots the variance versus the mean of the Pearson residuals obtained by the negative binomial regression computed by the function <code>compNoise</code> if <code>regNB</code> is <code>TRUE</code>. A local regression is also shown.

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.

Dominic Grc3<bc>n

RaceID

Identification of Cell Types and Inference of Lineage Trees from
Single-Cell RNA-Seq Data

plotPearsonRes function

<dl><dt>noise</dt>
<dd>List object with the background noise model and a variability matrix, returned by the <code>compNoise</code> function.</dd>
<dt>log</dt>
<dd>logical. If <code>TRUE</code> then the y-axis is log-transformed. Default is <code>FALSE</code>.</dd></dl>

Arguments

Function for plotting the variance of Pearson residuals — plotPearsonRes

<dl>

<dt>noise</dt>
<dd>List object with the background noise model and a variability matrix, returned by the <code>compNoise</code> function.</dd>


<dt>log</dt>
<dd>logical. If <code>TRUE</code> then the y-axis is log-transformed. Default is <code>FALSE</code>.</dd>

</dl>

plotPearsonRes: Function for plotting the variance of Pearson residuals

Description

Usage

Value

Arguments

Examples