applyMapTransform

Applies the map transformation associated with a selected optimization run to
a set of coordinates.

A toolkit for making antigenic maps from immunological assay data,
in order to quantify and visualize antigenic differences between different
pathogen strains as described in
Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World
Health Organization influenza vaccine strain selection process. Additional
functions allow for the diagnostic evaluation of antigenic maps and an
interactive viewer is provided to explore antigenic relationships amongst
several strains and incorporate the visualization of associated genetic
information.

S. Wilks

Racmacs

Antigenic Cartography Macros

Sam Wilks

applyMapTransform function

<dl><dt>coords</dt>
<dd>Coordinates to transform</dd>
<dt>map</dt>
<dd>The acmap object</dd>
<dt>optimization_number</dt>
<dd>The optimization number</dd></dl>

Arguments

Apply the current map transformation — applyMapTransform

<dl>

<dt>coords</dt>
<dd>Coordinates to transform</dd>


<dt>map</dt>
<dd>The acmap object</dd>


<dt>optimization_number</dt>
<dd>The optimization number</dd>

</dl>

applyMapTransform: Apply the current map transformation

Description

Usage

Value

Arguments

See Also