mapStress

A toolkit for making antigenic maps from immunological assay data,
in order to quantify and visualize antigenic differences between different
pathogen strains as described in
Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World
Health Organization influenza vaccine strain selection process. Additional
functions allow for the diagnostic evaluation of antigenic maps and an
interactive viewer is provided to explore antigenic relationships amongst
several strains and incorporate the visualization of associated genetic
information.

S. Wilks

Racmacs

Antigenic Cartography Macros

Sam Wilks

mapStress function

<dl><dt>map</dt>
<dd>The acmap object</dd>
<dt>optimization_number</dt>
<dd>The optimization number for which to calculate stress</dd></dl>

Arguments

Calculate the current map stress — mapStress

<dl>

<dt>map</dt>
<dd>The acmap object</dd>


<dt>optimization_number</dt>
<dd>The optimization number for which to calculate stress</dd>

</dl>

mapStress: Calculate the current map stress

Description

Usage

Value

Arguments

See Also