ptOpacity

agOpacity&lt;-

srOpacity&lt;-

These are helper functions to quickly set the opacity of points in a map,
they set both the fill and outline color opacity by modifying the fill
and outline colors to include an alpha channel for opacity. If you need
more control, for example different opacities for the fill and outline
colors, you alter the fill and outline opacities yourself, for example
with the <code><a href="/link/grDevices%3A%3Aadjustcolor()?package=Racmacs&version=1.2.9" data-mini-rdoc="Racmacs::grDevices::adjustcolor()">grDevices::adjustcolor()</a></code> function.

A toolkit for making antigenic maps from immunological assay data,
in order to quantify and visualize antigenic differences between different
pathogen strains as described in
Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World
Health Organization influenza vaccine strain selection process. Additional
functions allow for the diagnostic evaluation of antigenic maps and an
interactive viewer is provided to explore antigenic relationships amongst
several strains and incorporate the visualization of associated genetic
information.

S. Wilks

Racmacs

Antigenic Cartography Macros

Sam Wilks

ptOpacity function

<dl><dt>map</dt>
<dd>An acmap object</dd>
<dt>value</dt>
<dd>A vector of opacities</dd></dl>

Arguments

These are helper functions to quickly set the opacity of points in a map,
they set both the fill and outline color opacity by modifying the fill
and outline colors to include an alpha channel for opacity. If you need
more control, for example different opacities for the fill and outline
colors, you alter the fill and outline opacities yourself, for example
with the <code><a href='https://rdrr.io/r/grDevices/adjustcolor.html'>grDevices::adjustcolor()</a></code> function.

Set point opacity in a map — ptOpacity

<dl>

<dt>map</dt>
<dd>An acmap object</dd>


<dt>value</dt>
<dd>A vector of opacities</dd>

</dl>

ptOpacity: Set point opacity in a map

Description

Usage

Value

Arguments

See Also