Racmacs (version 1.2.9)

read.acmap: Read in acmap data from a file

Description

Reads an antigenic map file and converts it into an acmap data object.

Usage

read.acmap(
  filename,
  optimization_number = NULL,
  sort_optimizations = FALSE,
  align_optimizations = FALSE
)

Value

Returns the acmap data object.

Arguments

filename

Path to the file.

optimization_number

Numeric vector of optimization runs to keep, the default, NULL, keeps information on all optimization runs

sort_optimizations

Should optimizations be sorted in order of stress when the map data is read?

align_optimizations

Should optimizations be rotated and translated to match the orientation of the first optimization as closely as possible?

See Also

Other functions for working with map data: acmap(), addOptimization(), agReactivityAdjustments(), as.json(), edit_agNames(), edit_srNames(), keepBestOptimization(), keepSingleOptimization(), layerNames(), orderPoints, read.titerTable(), removePoints, save.acmap(), save.coords(), save.titerTable(), subsetCommonPoints, subsetMap()