srSequences

srSequences&lt;-

srNucleotideSequences

srNucleotideSequences&lt;-

Getting and setting sera sequence information

A toolkit for making antigenic maps from immunological assay data,
in order to quantify and visualize antigenic differences between different
pathogen strains as described in
Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World
Health Organization influenza vaccine strain selection process. Additional
functions allow for the diagnostic evaluation of antigenic maps and an
interactive viewer is provided to explore antigenic relationships amongst
several strains and incorporate the visualization of associated genetic
information.

S. Wilks

Racmacs

Antigenic Cartography Macros

Sam Wilks

srSequences function

<dl><dt>map</dt>
<dd>The acmap data object</dd>
<dt>missing_value</dt>
<dd>Character to use to fill in portions of the sequence matrix
where sequence data is missing.</dd>
<dt>value</dt>
<dd>A character matrix of sequences with rows equal to the number of
sera</dd></dl>

Arguments

Getting and setting sera sequence information — srSequences

<dl>

<dt>map</dt>
<dd>The acmap data object</dd>


<dt>missing_value</dt>
<dd>Character to use to fill in portions of the sequence matrix
where sequence data is missing.</dd>


<dt>value</dt>
<dd>A character matrix of sequences with rows equal to the number of
sera</dd>

</dl>

srSequences: Getting and setting sera sequence information

Description

Usage

Value

Arguments

See Also