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Racmacs (version 1.2.9)

tableColbases: Calculate column bases for a titer table

Description

For more information on column bases, what they mean and how they are calculated see vignette("intro-to-antigenic-cartography")

Usage

tableColbases(
  titer_table,
  minimum_column_basis = "none",
  fixed_column_bases = rep(NA, ncol(titer_table)),
  ag_reactivity_adjustments = rep(0, nrow(titer_table))
)

Value

Returns a numeric vector of the log-converted column bases for the table

Arguments

titer_table

The titer table

minimum_column_basis

The minimum column basis to assume

fixed_column_bases

Fixed column bases to apply

ag_reactivity_adjustments

Reactivity adjustments to apply on a per-antigen basis

See Also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableDistances(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), pointStress, recalculateStress(), stressTable(), tableDistances()