Racmacs (version 1.2.9)

tableDistances: Return calculated table distances for an acmap

Description

Takes the acmap object and, assuming the column bases associated with the currently selected or specified optimization, returns the table distances calculated from the titer data. For more information on column bases and their role in antigenic cartography see vignette("intro-to-antigenic-cartography")

Usage

tableDistances(map, optimization_number = 1)

Value

Returns a matrix of numeric table distances

Arguments

map

The acmap data object

optimization_number

The optimization number

See Also

Other map diagnostic functions: agCohesion(), bootstrapBlobs(), bootstrapMap(), checkHemisphering(), dimensionTestMap(), logtiterTable(), map-table-distances, mapBootstrapCoords, mapDistances(), mapRelaxed(), mapResiduals(), pointStress, ptBootstrapBlob, ptBootstrapCoords(), ptLeverage, ptTriangulationBlob, recalculateStress(), stressTable(), tableColbases(), triangulationBlobs(), unstableMaps

Other functions relating to map stress calculation: logtiterTable(), mapDistances(), mapResiduals(), pointStress, recalculateStress(), stressTable(), tableColbases()