RamiGO (version 1.18.0)

AmigoDot-class: Class "AmigoDot"

Description

AmigoDot represents a collection of objects that are extracted from an GraphViz DOT format file.

Objects from the Class

Objects can be created by calls to the constructor AmigoDot. Elements can be accessed with agraph, adjMatrix,annot, relations, and leaves.

Slots

agraph:

Object of class "igraph" containing the graph extracted from the DOT format file.

adjMatrix:

Object of class "matrix" containing the adjacency matrix of the tree.

annot:

Object of class "data.frame" containing the annotation of the tree.

relations:

Object of class "data.frame" containing the relations between the node of the tree.

leaves:

Object of class "data.frame" containing the leaves of the tree.

Methods

See AmigoDot

Examples

showClass("AmigoDot")