arab

arab.cl

arab.origin

arab.gnames


       This data if from Affy ATH1 array experiments of 
       genomic response to brassinosteroid in Arabidopsis 
       conducted at two laoratories. The data set contains 
       random selected 500 genes and 10 samples, 6 from lab 1 and 4 from 
       lab 2. Data was pre-processed by RMA 


datasets

Non-parametric method for identifying differentially
expressed (up- or down- regulated) genes based on the
estimated percentage of false predictions (pfp). The method can
combine data sets from different origins (meta-analysis) to increase the power
of the identification.

Fangxin Hong

RankProd

Rank Product method for identifying differentially expressed
genes with application in meta-analysis

arab function

This data if from Affy ATH1 array experiments of 
       genomic response to brassinosteroid in Arabidopsis 
       conducted at two laoratories. The data set contains 
       random selected 500 genes and 10 samples, 6 from lab 1 and 4 from 
       lab 2. Data was pre-processed by RMA

Genomic Response to Brassinosteroid in Arabidopsis

matrix of gene expression levels of 500 genes 
               from 10 samples, rows correspond to genes  and 
               columns to mRNA samples.

numeric vector indicating the treatment class, 
                 5 brassinosteroid-treated cases (code 1) 
                  and 5 control cases (code 0)

character vector containing the AffyID of 
                  the 500 genes for the expression matrix <code>arab</code>

numeric vector indicating the origin of 
                     the samples, 6 samples from lab 1 (code 1) 
                     and 4 samples from lab 2 (code 2)

arab: Genomic Response to Brassinosteroid in Arabidopsis

Description

Usage

Arguments

Value

References