lymphoma: Subset of the Intensity data for 8 cDNA slides with CLL and DLBL samples
from the Alizadeh et al. paper in Nature 2000
Description
8 cDNA chips from Alizadeh lymphoma paperformat
lymphoma is an exprSet
containing the data from 8 chips
from the lymphoma data set by Alizadeh et al. (see references). Each
chip represents two samples: on color channel 1 (CH1, Cy3, green) the
common reference sample, and on color channel 2 (CH2, Cy5, red) the
various disease samples. See pData(lymphoma). The 9216x16
matrix exprs(lymphoma) contains the background-subtracted spot
intensities (CH1I-CH1B and CH2I-CH2B, respectively).source
http://genome-www5.stanford.edu/MicroArray/SMDDetails
The chip intensity files were downloaded from the Stanford
microarray database. Starting from the link below, this was done by
following the links Published Data ->
Alizadeh AA, et al. (2000) Nature 403(6769):503-11 ->
Data in SMD -> Display Data, and selecting the following
8 slides:
l{
lc7b019
lc7b047
lc7b048
lc7b056
lc7b057
lc7b058
lc7b069
lc7b070
}
Then, the script makedata.R from the scripts subdirectory
of this package was run to generate the Rdata object.References
A. Alizadeh et al., Distinct types of diffuse large B-cell
lymphoma identified by gene expression profiling. Nature 403(6769):503-11,
Feb 3, 2000.