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RareVariantVis (version 1.6.2)

Visualization of rare variants in whole genome sequencing data

Description

Genomic variants can be analyzed and visualized using many tools. Unfortunately, number of tools for global interrogation of variants is limited. Package RareVariantVis aims to present genomic variants (especially rare ones) in a global, per chromosome way. Visualization is performed in two ways - standard that outputs png figures and interactive that uses JavaScript d3 package. Interactive visualization allows to analyze trio/family data, for example in search for causative variants in rare Mendelian diseases.

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Version

Version

1.6.2

License

Artistic-2.0

Maintainer

Tomasz Stokowy

Last Published

February 15th, 2017

Functions in RareVariantVis (1.6.2)

movingAverage

Computation of moving average
trioVis

Interactive visualization of rare variants on the chromosome, applicable for trio data
FatherRareVariantsChr21

Annotated rare variants on the chromosome 21, human genome 19
SonRareVariantsChr21

Annotated rare variants on the chromosome 21, human genome 19, subset of SonVariantsChr21
multipleVis

Interactive visualization of rare variants on the chromosome, applicable for multiple files
CentromeresHg19

Positions of centromeres on all chromosomes, human genome 19
MotherRareVariantsChr21

Annotated rare variants on the chromosome 21, human genome 19
rareVariantVis

Interactive visualization of rare variants on the chromosome
chromosomeVis

Visualization of variants on the chromosome