subregions.LCT

Example of arbitrary functional categories (coding or regulatory) in the LCT locus (bed format, GRCH37). 
 "Coding" corresponds to coding parts of the exons and "Regulatory" corresponds to everything that falls outside these coding regions.
Data contain the <code>Chr</code>, the <code>Start</code> position, the <code>End</code> position and the <code>Name</code> of all functional regions in the LCT locus.

Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome; and genetic simulations.

Ozvan Bocher

Ravages

Rare Variant Analysis and Genetic Simulations

subregions.LCT function

The data contain one dataframe with four columns:<dl>
 <dt><code>Chr</code></dt>
<dd>The chromosome of the gene</dd> <dt><code>Start</code></dt>
<dd>The start position of the functional region (0-based)</dd> <dt><code>End</code></dt>
<dd>The end position of the functional region (1-based)</dd> <dt><code>Name</code></dt>
<dd>The name of the gene</dd> 
</dl>

Format

Exemple of functional categories — subregions.LCT

The data contain one dataframe with four columns:<dl>
 <dt><code>Chr</code></dt>
<dd>The chromosome of the gene</dd>

 <dt><code>Start</code></dt>
<dd>The start position of the functional region (0-based)</dd>

 <dt><code>End</code></dt>
<dd>The end position of the functional region (1-based)</dd>

 <dt><code>Name</code></dt>
<dd>The name of the gene</dd>

 
</dl>

subregions.LCT: Exemple of functional categories

Description

Arguments

Format

See Also