RbioRXN-package

RbioRXN

RbioRXN is an R package that facilitates gaining and processing biochemical reaction such as Rhea, MetaCyc, KEGG and UniPathway. The package provides the functions to download and parse raw data, instantiate generic reaction, and check mass balance. The package aims to construct an integrated metabolic network and genome-scale metabolic model.

Rhea

Generic reaction

MetaCyc

UniPathway

KEGG

Biochemical reaction database

Instantiation

RbioRXN is an R package that facilitates retrieving and processing biochemical reaction data such as Rhea, MetaCyc, KEGG and Unipathway. The package provides the functions to download and parse data, instantiate generic reaction and check mass-balance. The package aims to construct an integrated metabolic network and genome-scale metabolic model.

Byoungnam Min

RbioRXN - process Rhea, KEGG, MetaCyc, Unipathway biochemical
        reaction data

RbioRXN-package function

RbioRXN - Download/process Rhea, MetaCyc, KEGG and UniPathway biochemical reaction

RbioRXN-package: RbioRXN - Download/process Rhea, MetaCyc, KEGG and UniPathway biochemical reaction

Description

Arguments

Details

References