get.metacyc.all: Download current MetaCyc via BioCyc Web Services
Description
This function first retrieves all MetaCyc reaction IDs and download BioPAX level 3 for each reaction, then parse to generate data.frame() object. Note that because this function interacts with BioCyc web service for every reaction, it will take many hours depending on your network speed. Thus, we strongly recommend to use parse.metacyc.reaction() and parse.metacyc.compound() functions in this package after manually downloading MetaCyc from http://biocyc.org/download.shtml
Usage
get.metacyc.all()
Arguments
Value
R data.frame() object where data fields indclude
MetaCycMetaCyc ID
nameReaction equation with chemical standard name
ec_numberE.C number
name_idReaction equation with MetaCyc compound ID
References
MetaCyc download page: http://biocyc.org/download.shtml
MetaCyc web services: http://biocyc.org/web-services.shtml