RbioRXN (version 1.3.1)

get.metacyc.reaction.byId: Download given MetaCyc reaction via BioCyc web services

Description

This function downloads and parses given MetaCyc reaction in BioPAX level 3 via MetaCyc web services (http://biocyc.org/web-services.shtml), and generate data.frame() object

Usage

get.metacyc.reaction.byId(metacycId)

Arguments

metacycId

MetaCyc ID: single or multiple entries in vector

Value

• data.frame() object where data fields include
• MetaCyc
  MetaCyc ID
• name
  Reaction equation with chemical standard name
• ec_number
  E.C. number
• name_id
  Reaction equation with MetaCyc compound ID

References

MetaCyc download page: http://biocyc.org/download.shtml MetaCyc web services: http://biocyc.org/web-services.shtml

Examples

# Not run:

##  get.metacyc.reaction.byId("RXN-13970")
##  get.metacyc.reaction.byId("SERINE--PYRUVATE-AMINOTRANSFERASE-RXN")
##  get.metacyc.reaction.byId("RXN-13759")
##  get.metacyc.reaction.byId("RXN-14352")
##  get.metacyc.reaction.byId("TRANS-RXN-220")
##  get.metacyc.reaction.byId("RXN-12549")