RbioRXN (version 1.5.1)

get.rhea.byCompound: Download Rhea reaction by compound

Description

Download and parse Rhea database with given keyword

Usage

get.rhea.byCompound(rheaCompound)

Arguments

rheaCompound

e.g., caffeine

Value

data.frame() object where data fields include

rheaId

Rhea ID

reactionType

BiochemicalReaction or transportReaction

equationWithCommonName

Textual reaction equation (compound standard names)

sameParticipant

Reactions with same reactants and products, but different directionalities

mapped

formuled

polymerization

chemicallyBalanced

status

transport

direction

classOfReactions

At least one reaction participant is class compound described in ChEBI

equationWithChebi

Reaction equation with ChEBI

equationParticipant

crossLinks

if reaction has cross-link to other databases, new columns are generated such as "MetaCyc", "KEGG" etc

References

Rhea database: http://www.ebi.ac.uk/rhea/home.xhtml

Examples

# Not run:

##  get.rhea.byCompound("caffeine")