RbioRXN (version 1.5.1)

get.rhea.byId: Download Rhea by Rhea ID

Description

Download and parse Rhea with given Rhea ID

Usage

get.rhea.byId(rheaId)

Arguments

rheaId

Single Rhea ID or multiple Rhea IDs in vector

Value

data.frame() object where data fields include

rheaId

Rhea ID

reactionType

BiochemicalReaction or transportReaction

equationWithCommonName

Textual reaction equation (compound standard names)

sameParticipant

Reactions with same reactants and products, but different directionalities

mapped

formuled

polymerization

chemicallyBalanced

status

transport

direction

classOfReactions

At least one participant is class compounds described in ChEBI

equationWithChebi

Reaction equation with ChEBI

equationParticipant

crossLinks

If the reaction has cross-link to other databases, new columns are generated such as "MetaCyc", "KEGG" etc

References

Rhea database: http://www.ebi.ac.uk/rhea/home.xhtml

Examples

# Not run:

##  get.rhea.byId(c('10000', '10377'))