RcadeSTAT1


The Rcade object generated in the vignette, <code>vignette("Rcade")</code>.


datasets

Rcade (which stands for "R-based analysis of ChIP-seq And
Differential Expression") is a tool for integrating ChIP-seq
data with differential expression summary data, through a
Bayesian framework. A key application is in identifing the
genes targeted by a transcription factor of interest - that is,
we collect genes that are associated with a ChIP-seq peak, and
differential expression under some perturbation related to that
TF.

Jonathan Cairns

Rcade

R-based analysis of ChIP-seq And Differential Expression - a
tool for integrating a count-based ChIP-seq analysis with
differential expression summary data.

RcadeSTAT1 function

Format

Differential Expression data from Array Express, http://www.ebi.ac.uk/arrayexpress, under accession number E-GEOD-11299. STAT1 ChIP-seq data from the Snyder lab, as part of the ENCODE consortium\ 
Input DCC accession numbers: wgEncodeEH000611 and wgEncodeEH000612\
ChIP DCC accession number: wgEncodeEH000614

Source

The Rcade object generated in the vignette, <code>vignette("Rcade")</code>.

RcadeSTAT1: Rcade object - STAT1 data

Description

Usage

Arguments

Format

Source

Examples