RcadeTrack-class


Class for storing information pertaining to a set of ChIP-seq experiments - in particular, count data and 


misc

Rcade (which stands for "R-based analysis of ChIP-seq And
Differential Expression") is a tool for integrating ChIP-seq
data with differential expression summary data, through a
Bayesian framework. A key application is in identifing the
genes targeted by a transcription factor of interest - that is,
we collect genes that are associated with a ChIP-seq peak, and
differential expression under some perturbation related to that
TF.

Jonathan Cairns

Rcade

R-based analysis of ChIP-seq And Differential Expression - a
tool for integrating a count-based ChIP-seq analysis with
differential expression summary data.

RcadeTrack-class function

Class for storing information pertaining to a set of ChIP-seq experiments - in particular, count data and

RcadeTrack-class: RcadeTrack Class

Description

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See Also