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RcmdrPlugin.depthTools (version 1.3)

R commander Depth Tools Plug-In

Description

This package provides an Rcmdr plug-in based on the depthTools package, which implements different robust statistical tools for the description and analysis of gene expression data based on the Modified Band Depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods.

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Version

Install

install.packages('RcmdrPlugin.depthTools')

Monthly Downloads

847

Version

1.3

License

GPL (>= 2)

Maintainer

Aurora Torrente

Last Published

June 13th, 2013

Functions in RcmdrPlugin.depthTools (1.3)

computeTmean

Modified Band Depth-Based Alpha Trimmed Mean
runTAD

Weighted Trimmed Mean Distance Classification Method
runDS

Distance to the Trimmed Mean Classification Method
computeMBD

Computation of the Modified Band Depth in R-commander
plotCentralCurves

Plot of the p Percent Most Central Curves of a Dataset
runRtest

Rank Test Based on the Modified Band Depth
computeScaleCurve

Computation and Representation of the Scale Curve
RcmdrPlugin.depthTools-internal

Internal RcmdrPlugin.depthTools objects