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Rcolombos (version 2.0.2)

advanced_search_by_genes: Accessory function allowing the advanced_search by gene_ids, go, annotation

Description

Accessory function allowing the advanced_search by gene_ids, go, annotation

Usage

advanced_search_by_genes(organism = "bsubt", ids = NULL, geneNames = FALSE, g_search_type = "genes", ann_type)

Arguments

organism
A character containing the organism id: use listOrganisms to display the available organisms.
ids
A vector of strings representing gene_id, go terms or annotation entities according the search type.
geneNames
boolean if == FALSE (default) return the locustag otherwise the gene_name for the selected genes.
g_search_type
A string either genes, go or annotation.
ann_type
A string containing the selected gene_annotation_type: use listEntities to display the available entities.

Value

A data.frame containing locustag (gene_names), contrasts and M-values for the current organism and genes.

References

http://colombos.net