Rcolombos (version 2.0.2)

getCompendium: This method allows to download/import the full compendium for the selected organism

Description

This method allows to download/import the full compendium for the selected organism

Usage

getCompendium(organism = "hpylo", path = NULL)

Arguments

organism

A character containing the organism id: use listOrganisms to display the available organisms.

path

A string indicating the path where the file will be either downloaded or read, if already retrieved

Value

A list containing two or three data.frames.In case switchVersion is equal to 2:

exprdata

the full compendium for the selected organism

condannot

The condition annotation for the selected organism

In case switchVersion is equal to 3:

exprdata

the full compendium for the selected organism

refannot

The condition annotation for the reference contrasts

testannot

The condition annotation for the test contrasts

References

http://colombos.net

Examples

## Not run: 
# library('Rcolombos')
# hpylo <- getCompendium("hpylo")
# ## End(Not run)