Rcolombos (version 2.0.2)

get_contrast_annotations: This method allows to retrieve all the annotations for the Reference and Test conditions for a selected organism (nickname) and for a user specified contrast name. Please be aware that only one contrast is allowed in input. It returns a list containing both ReferenceAnnnotation and TestAnnotation. and return the available entities

Description

This method allows to retrieve all the annotations for the Reference and Test conditions for a selected organism (nickname) and for a user specified contrast name. Please be aware that only one contrast is allowed in input. It returns a list containing both ReferenceAnnnotation and TestAnnotation. and return the available entities

Usage

get_contrast_annotations(organism = "bsubt", contrast_name = "GSM27217.ch2-vs-GSM27217.ch1")

Arguments

organism

A character containing the organism id: use listOrganisms to display the available organisms.

contrast_name

annotation A character containing the selected contrast_name type: use listContrasts to display the available contrast names.

Value

A list of two data.frame, ReferenceAnnnotation and TestAnnotation, containing 2 columns: both the properties and the values for the selected contrast

References

http://colombos.net

Examples

## Not run: 
#  library("Rcolombos")
#  out <- get_contrast_annotations(organism="bsubt",
#  contrast_name="GSM27217.ch2-vs-GSM27217.ch1")
# ## End(Not run)