Rcolombos (version 2.0.2)

listEntities: This method takes a string containing the nickname for the selected organism and a string containing the annotation type and return the available entities

Description

This method takes a string containing the nickname for the selected organism and a string containing the annotation type and return the available entities

Usage

listEntities(organism = "ecoli", annotation = "Pathway")

Arguments

organism

A character containing the organism id: use listOrganisms to display the available organisms.

annotation

A character containing the selected annotation type: use listAnnotationTypes to display the available types.

Value

A vector containing the available entities for the selected annotation type.

References

http://colombos.net

Examples

## Not run: 
#  library("Rcolombos")
#  pathway_entities <- listEntities(organism="bsubt", annotation="Pathway")
#  Tr_entities <- listEntities("bsubt","Transcriptional regulation")
# ## End(Not run)