Rcpi (version 1.8.0)

extractProtCTriad: Conjoint Triad Descriptor

Description

Conjoint Triad Descriptor

Usage

extractProtCTriad(x)

Arguments

x

A character vector, as the input protein sequence.

Value

A length 343 named vector

Details

This function calculates the Conjoint Triad descriptor (Dim: 343).

References

J.W. Shen, J. Zhang, X.M. Luo, W.L. Zhu, K.Q. Yu, K.X. Chen, Y.X. Li, H.L. Jiang. Predicting Protein-protein Interactions Based Only on Sequences Information. Proceedings of the National Academy of Sciences. 007, 104, 4337--4341.

Examples

x = readFASTA(system.file('protseq/P00750.fasta', package = 'Rcpi'))[[1]]
extractProtCTriad(x)