downloadOrphanet

Downloads the Orphanet nomenclature pack and converts it into a
format to be appended to MANUAL_SYNONYMS and used in concept
database creation.

Functions and methods for manipulating 'SNOMED CT'
concepts. The package contains functions for loading the 'SNOMED CT'
release into a convenient R environment, selecting 'SNOMED CT'
concepts using regular expressions, and navigating the 'SNOMED CT'
ontology. It provides the 'SNOMEDconcept' S3 class for a vector of
'SNOMED CT' concepts (stored as 64-bit integers) and the
'SNOMEDcodelist' S3 class for a table of concepts IDs with
descriptions. The package can be used to construct sets of
'SNOMED CT' concepts for research (<doi:10.1093/jamia/ocac158>).
For more information about 'SNOMED CT' visit
<https://www.snomed.org/>.

Anoop Shah

Rdiagnosislist

Manipulate SNOMED CT Diagnosis Lists

downloadOrphanet function

<dl><dt>orphanet_url</dt>
<dd>URL or filepath to Orphanet zip file</dd>
<dt>masterfile_name</dt>
<dd>name of xls file containing Orphanet synonyms.
If omitted, it is assumed to be the only file with 'MasterFile'
in its name, and the program will search for it in the Orphanet
zip file.</dd>
<dt>SNOMED</dt>
<dd>environment containing SNOMED CT dictionary</dd></dl>

Arguments

Download Orphanet to assist with adding synonyms for rare diseases — downloadOrphanet

<dl>

<dt>orphanet_url</dt>
<dd>URL or filepath to Orphanet zip file</dd>


<dt>masterfile_name</dt>
<dd>name of xls file containing Orphanet synonyms.
If omitted, it is assumed to be the only file with 'MasterFile'
in its name, and the program will search for it in the Orphanet
zip file.</dd>


<dt>SNOMED</dt>
<dd>environment containing SNOMED CT dictionary</dd>

</dl>

downloadOrphanet: Download Orphanet to assist with adding synonyms for rare diseases

Description

Usage

Value

Arguments

References

See Also

Examples