ReactomePA: Reactome Pathway Analysis
This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.
A discussion forum can be found at https://groups.google.com/forum/#!forum/clusterprofiler.
Authors
Guangchuang YU, School of Public Health, The University of Hong Kong http://guangchuangyu.github.io
License
All source code is copyright, under the GPL-2 License. For more information on GPL-2 License see http://www.gnu.org/licenses/gpl-2.0.html
Installation
To install:
- the latest released version:
biocLite("ReactomePA")
- the latest development version:
devtools::install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/ReactomePA"))
Documentation
To view the vignette of ReactomePA
installed in your system, start R
and enter:
vignette("ReactomePA", package="ReactomePA")
More documents can be found in http://www.bioconductor.org/packages/DOSE, http://www.bioconductor.org/packages/clusterProfiler and http://guangchuangyu.github.io/tags/reactomepa.
Bugs/Feature requests
- If you have any, let me know. Thx!