ReactomePA: Reactome Pathway Analysis

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

A discussion forum can be found at https://groups.google.com/forum/#!forum/clusterprofiler.

Authors

Guangchuang YU, School of Public Health, The University of Hong Kong http://guangchuangyu.github.io

License

All source code is copyright, under the GPL-2 License. For more information on GPL-2 License see http://www.gnu.org/licenses/gpl-2.0.html

Installation

To install:

• the latest released version: biocLite("ReactomePA")
• the latest development version: devtools::install_github(c("GuangchuangYu/DOSE", "GuangchuangYu/ReactomePA"))

Documentation

To view the vignette of ReactomePA installed in your system, start R and enter:

vignette("ReactomePA", package="ReactomePA")

More documents can be found in http://www.bioconductor.org/packages/DOSE, http://www.bioconductor.org/packages/clusterProfiler and http://guangchuangyu.github.io/tags/reactomepa.

Bugs/Feature requests

• If you have any, let me know. Thx!