A_example

<p>A binary matrix of class <code>matrix</code> used as toy example in <code>getPM</code> and <code>getMutex</code> and <code>getMutexAB</code> and <code>getMutexGroup</code>.</p>

datasets

An optimized method for identifying mutually
exclusive genomic events.  Its main contribution is a
statistical analysis based on the Poisson-Binomial
distribution that takes into account that some samples
are more mutated than others. See [Canisius, Sander, John WM Martens,
and  Lodewyk FA Wessels. (2016)  "A novel independence test for
somatic alterations in cancer shows that
biology drives mutual exclusivity but chance explains
most co-occurrence." Genome biology 17.1 : 1-17. <doi:10.1186/s13059-016-1114-x>].
The mutations matrices are sparse matrices. The method developed takes
advantage of the advantages of this type of matrix to save
time and computing resources.

Juan A. Ferrer-Bonsoms Developer

Rediscover

Identify Mutually Exclusive Mutations

Juan A. Ferrer-Bonsoms

Laura Jareno

Angel Rubio

A_example function

<p>The format is:
 num [1:1000, 1:500] 0 0 0 0 0 1 0 0 0 1 ...</p>

Format

A_example data — A_example

A_example data

A_example: A_example data

Description

Usage

Arguments

Format

Examples