B_example

A binary matrix of class <code>matrix</code> used as toy example in <code>getPM</code> and <code>getMutex</code> and <code>getMutexAB</code> and <code>getMutexGroup</code>.

datasets

An optimized method for identifying mutually
exclusive genomic events. Its main contribution is a
statistical analysis based on the Poisson-Binomial
distribution that takes into account that some samples
are more mutated than others. See [Canisius, Sander, John WM Martens,
and Lodewyk FA Wessels. (2016) "A novel independence test for
somatic alterations in cancer shows that
biology drives mutual exclusivity but chance explains
most co-occurrence." Genome biology 17.1 : 1-17. <doi:10.1186/s13059-016-1114-x>].
The mutations matrices are sparse matrices. The method developed takes
advantage of the advantages of this type of matrix to save
time and computing resources.

Juan A. Ferrer-Bonsoms Developer

Rediscover

Identify Mutually Exclusive Mutations

Juan A. Ferrer-Bonsoms

Laura Jareno

Angel Rubio

B_example function

The format is: 
int [1:1000, 1:500] 0 1 1 0 1 0 0 0 1 1 ...

Format

B_example data — B_example

B_example data

B_example: B_example data

Description

Usage

Arguments

Format

Examples