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RepeatABEL (version 1.1)

GWAS for Multiple Observations on Related Individuals

Description

Performs genome-wide association studies on individuals that are both related and have repeated measurements.

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Version

Install

install.packages('RepeatABEL')

Monthly Downloads

382

Version

1.1

License

GPL

Maintainer

Lars Ronnegard

Last Published

August 19th, 2016

Functions in RepeatABEL (1.1)

GWAS for Studies having Repeated Measurements on Related Individuals

simulate_PhenData

Simulation function for the RepeatABEL package.

Create_gwaa_scan

Creates a scan.gwaa object

Constructs the (co)variance matrix for y

10,000 SNPs from 849 collared flycatchers

Example GenABEL data

Computes a Genetic Relationship Matrix from a GenABEL object

Example phenotype data

Fits a linear mixed model (without fixed SNP effects) and computes the fitted variance-covariance matrix for later use in the rGLS function.

RepeatABEL-package

GWAS for repeated observations on related individuals

SmoothSNPmatrix

Imputes column means to missing genotypes

thinned.flycatchers

10,000 SNPs from 200 collared flycatchers