RepeatedHighDim package - RDocumentation

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A working copy of RepeatedHighDim. Might not be the same copy as the CRAN version. Please use the CRAN-version: https://cran.r-project.org/web/packages/RepeatedHighDim/index.html This Version is experimental.

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Version

Install

install.packages('RepeatedHighDim')

Monthly Downloads

12,787

Version

2.4.0

License

GPL (>= 3)

Maintainer

Klaus Jung

Last Published

April 14th, 2025

Functions in RepeatedHighDim (2.4.0)

scTC_trim_effect

scTC_trim_effect: Compare scTrimClust trimming against default Seurat analysis

netRNA:Network meta-analysis for gene expression data

Genetic algorithm for generating correlated binary data

Plots a gemstone to an interactive graphics device

Calculates the halfspace location depth

robust_covid_data

Robust COVID-19 Dataset

scTC_bpplot: Post-trim breakpoint heatmap for scTrimClust results

Setup of the start matrix

scTrimClust: Cluster visualization with alpha hull-based outlier detection

COVID-19 LogNormalized Marker Effects (Internal)

robust_covid_markers_03trim

Robust COVID-19 Markers (03 Trim) Dataset

Calculation of probabilities for binary sequences

Summary of RHighDim function

Simulating correlated binary variables using the algorithm by Emrich and Piedmonte (1991)

COVID-19 CLR Transformation Marker Effects (Internal)

scTC_eff_log_robust

Robust COVID-19 LogNormalized Effects (Internal)

ProcessedSingle-Cell Data

robust_covid_markers

Robust COVID-19 Markers Dataset

robust_covid_markers_02trim

Robust COVID-19 Markers (02 Trim) Dataset

scTC_eff_clr_robust

Robust COVID-19 CLR Transformation Effects (Internal)

Calculation of adjusted confidence intervals

Detection of global group effect

Diagnostic plot for comparison of two correlation matrices.

Calculates the depth median.

Specifies grid for the calculation of the halfspace location depths

Volcano plot of adjusted confidence intervals

GlobTestMissing

Detection of global group effect

Calculates the bag

RepeatedHighDim

RepeatedHighDim Package

Check for 'limma' availability

Calculate lower and upper the bounds for pairwise correlations

Calculates the fence and the loop

COVID-19 Markers Dataset

Simulating correlated binary variables using the algorithm by Qaqish (2003)