ScoresList

ScoresList-class

names,ScoresList-method

names<-,ScoresList-method

tables

tables,ScoresList-method

length,ScoresList-method

show,ScoresList-method

[,ScoresList,ANY,missing,ANY-method

subsetRows

subsetRows,ScoresList-method


  Contains a list of tables of sequencing coverages or array intensities,
  and the parameters that were used to generate them.


Tools for the analysis of enrichment-based epigenomic
data.  Features include summarization and visualization of
epigenomic data across promoters according to gene expression
context, finding regions of differential methylation/binding,
BayMeth for quantifying methylation etc.

Mark Robinson

Repitools

Epigenomic tools

ScoresList function

In the following code snippets, <code>x</code> is a ScoresList object. <dl>
    <dt></dt><dd>
    	<code>names(x)</code>, <code>names(x) &lt;- value</code>
	Gets and sets the experiment type names.
    </dd> <dt></dt><dd>
	<code>tables(x)</code>
	Gets the list of score matrices.
    </dd> <dt></dt><dd>
	<code>length(x)</code>
	Gets the number of score matrices.
    </dd> </dl> 

Accessors

In the following code snippets, <code>x</code> is a ScoresList object. <dl>
    <dt></dt><dd>
	<code>x[i]</code>
	Creates a ScoresList object, keeping only the <code>i</code> matrices.
    </dd> <dt></dt><dd>
	<code>subsetRows(x, i = NULL)</code>
	Creates a ScoresList object, keeping only the <code>i</code> features.
    </dd> </dl> 

Subsetting

Container for <code>featureScores()</code> output.

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ScoresList: Container for `featureScores()` output.

Description

Arguments

Accessors

Subsetting