Usage
"enrichmentPlot"(x, seq.len, cols = rainbow(length(x)), xlim = c(0, 20), main = "Enrichment Plot", total.lib.size = TRUE, verbose = TRUE, ...)
Arguments
x
A GRangesList object of reads to plot enrichment of. The chromosome
lengths must be stored in the Seqinfo of this object.
seq.len
The fragment size to be used for extending the sequencing reads.
cols
The line colour for each element of x
xlim
xlim parameter passed to plot, the default is appropriate for
"linear" cpgDensityCalc weighting.
main
main parameter passed to plot
total.lib.size
Whether to normalise enrichment values to the total number
of reads per lane.
verbose
Print details of processing.
...
Additional graphical parameters to pass to plot.