Repitools (version 1.18.0)

getProbePositionsDf: Translate Affymetrix probe information in a table.

Description

Translates the probe information in the AromaCellPositionFile to a data.frame object.

Usage

"getProbePositionsDf"(cdf, chrs, ..., verbose = TRUE)

Arguments

cdf

An AffymetrixCdfFile object.

chrs

A vector of chromosome names. Optional.

...

Further arguments to send to getCellIndices.

verbose

Logical; whether or not to print out progress statements to the screen.

Value

A data.frame with 3 columns: chr, position, index

Details

This assumes that the AromaCellPositionFile exist.

Examples

## not run
# probePositions <- getProbePositionsDf(cdfU)