hcRegions


	 File to mask out areas of the genome that are prone to causing false positives in ChIP-seq and other sequencing based functional assays,
     as proposed by Pickrell et al. (2011), Bioinformatics 27: 2144-2146, http://eqtl.uchicago.edu/Home.html. 
     

datasets

Tools for the analysis of enrichment-based epigenomic
data.  Features include summarization and visualization of
epigenomic data across promoters according to gene expression
context, finding regions of differential methylation/binding,
BayMeth for quantifying methylation etc.

Mark Robinson

Repitools

Epigenomic tools

hcRegions function

A GRanges object created using the bedfile provided on http://eqtl.uchicago.edu/Masking/seq.cov1.ONHG19.bed.gz.

Format

Pickrell et al. (2011), Bioinformatics 27: 2144-2146.

Source

File to mask out areas of the genome that are prone to causing false positives in ChIP-seq and other sequencing based functional assays,
     as proposed by Pickrell et al. (2011), Bioinformatics 27: 2144-2146, http://eqtl.uchicago.edu/Home.html.

hcRegions: Masking files for hg19

Description

Usage

Arguments

Format

Source