W303_S

Sequence read coverage for wild type replicating sample
(T7107 strain). The cells were stained with DNA dye and sorted
based on DNA content into S phase fraction. Extracted DNA
was sequenced and mapped to sacCer3 genome. Unique reads were
calculated in 1 kb genomic bins.

datasets

coverage

sortSeq

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

W303_S function

data frame with 11820 rows and 5 variables:<dl>
	<dt>chrom</dt>
<dd>short chromosome name</dd>	<dt>chromStart</dt>
<dd>left chromosome coordinate</dd>	<dt>chromEnd</dt>
<dd>right chromosome coordinate</dd>	<dt>name</dt>
<dd>sample name</dd>	<dt>score</dt>
<dd>read number in current bin</dd>
</dl>

Format

Sequence read coverage for wild type S.cerevisiae W303 replicating sample — W303_S

data frame with 11820 rows and 5 variables:<dl>
	<dt>chrom</dt>
<dd>short chromosome name</dd>

	<dt>chromStart</dt>
<dd>left chromosome coordinate</dd>

	<dt>chromEnd</dt>
<dd>right chromosome coordinate</dd>

	<dt>name</dt>
<dd>sample name</dd>

	<dt>score</dt>
<dd>read number in current bin</dd>


</dl>

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W303_S: Sequence read coverage for wild type S.cerevisiae W303 replicating sample

Description

Usage

Arguments

Format

References

Examples