compareRatios

compareRatios takes two ratio dataframes that were binned the same way and uses z-score
statistics to find p-values of their differences. The function outputs a combined dataframe containing
the two input ratio dataframes in a long format with added 'p.value' column.

Bioinformatics

genomics

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

compareRatios function

<dl><dt>ratio1</dt>
<dd>Ratio dataframe, or a string containing name of a ratio dataframe (dataframe or string).</dd>
<dt>ratio2</dt>
<dd>Ratio dataframe, or a string containing name of a ratio dataframe (dataframe or string).</dd></dl>

Arguments

A function to compare two replication profiles — compareRatios

<dl>

<dt>ratio1</dt>
<dd>Ratio dataframe, or a string containing name of a ratio dataframe (dataframe or string).</dd>


<dt>ratio2</dt>
<dd>Ratio dataframe, or a string containing name of a ratio dataframe (dataframe or string).</dd>

</dl>

compareRatios: A function to compare two replication profiles

Description

Usage

Arguments

Examples