guide

Guide dataframe for plotting smoothed sortSeq data

datasets

replication

sortSeq

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

guide function

Dataframe with 2 rows and 6 variables:
<dl>
		<dt>order</dt>
<dd>Order to plot data in</dd>		<dt>name.rep</dt>
<dd>Name of replicating sample</dd>		<dt>name.nonRep</dt>
<dd>Name of non-replicating sample</dd>		<dt>raw</dt>
<dd>Should raw data be plotted?</dd>		<dt>smooth</dt>
<dd>Should smooth data be plotted?</dd>		<dt>color</dt>
<dd>Color to plot the profile in</dd>	
</dl>

Format

Guide dataframe for plotting smoothed sortSeq data — guide

Dataframe with 2 rows and 6 variables:
<dl>
		<dt>order</dt>
<dd>Order to plot data in</dd>

		<dt>name.rep</dt>
<dd>Name of replicating sample</dd>

		<dt>name.nonRep</dt>
<dd>Name of non-replicating sample</dd>

		<dt>raw</dt>
<dd>Should raw data be plotted?</dd>

		<dt>smooth</dt>
<dd>Should smooth data be plotted?</dd>

		<dt>color</dt>
<dd>Color to plot the profile in</dd>

	
</dl>

guide: Guide dataframe for plotting smoothed sortSeq data

Description

Usage

Arguments

Format

Examples