makeRatio

A function to calculate 'score' ratio between two bed dataframes
makeRatio merges two supplied bed dataframes, calculates ratio of their "score" values
normalises the ratio by the 'score' sums.

Bioinformatics

replication

genomics

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

makeRatio function

<dl><dt>bedRep</dt>
<dd>Bed dataframe containing read counts from a replicating sample (dataframe).
The bed dataframe must contain "chrom","chromStart", "chromEnd" and "score" columns.</dd>
<dt>bedNonRep</dt>
<dd>Bed dataframe containing read counts from a non-replicating sample (dataframe).
The bed dataframe must contain "chrom","chromStart", "chromEnd" and "score" columns.</dd></dl>

Arguments

A function to calculate 'score' ratio between two bed dataframes
makeRatio merges two supplied bed dataframes, calculates ratio of their "score" values
normalises the ratio by the 'score' sums. — makeRatio

<dl>

<dt>bedRep</dt>
<dd>Bed dataframe containing read counts from a replicating sample (dataframe).
The bed dataframe must contain "chrom","chromStart", "chromEnd" and "score" columns.</dd>


<dt>bedNonRep</dt>
<dd>Bed dataframe containing read counts from a non-replicating sample (dataframe).
The bed dataframe must contain "chrom","chromStart", "chromEnd" and "score" columns.</dd>

</dl>

A function to calculate 'score' ratio between two bed dataframes
makeRatio merges two supplied bed dataframes, calculates ratio of their "score" values
normalises the ratio by the 'score' sums.

makeRatio: A function to calculate 'score' ratio between two bed dataframes makeRatio merges two supplied bed dataframes, calculates ratio of their "score" values normalises the ratio by the 'score' sums.

Description

Usage

Arguments

Examples