plotBed

A function to boxplot 'score' column of a BED dataframe,
per unique chromosome name in the 'chrom' column. The resulting plot also highlights outliers
based on the inter quartile range (IQR). The genome wide median is plotted as a pink line through the boxplots.

boxplot

Bioinformatics

genomics

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

plotBed function

<dl><dt>bed</dt>
<dd>A dataframe containing 'score' and 'chrom' columns (dataframe).</dd>
<dt>plotting</dt>
<dd>Should the plot object be sent to the default device? (boolean, defaults to TRUE).</dd></dl>

Arguments

A function to boxplot 'score' column of a BED dataframe,
per unique chromosome name in the 'chrom' column. The resulting plot also highlights outliers
based on the inter quartile range (IQR). The genome wide median is plotted as a pink line through the boxplots. — plotBed

<dl>

<dt>bed</dt>
<dd>A dataframe containing 'score' and 'chrom' columns (dataframe).</dd>


<dt>plotting</dt>
<dd>Should the plot object be sent to the default device? (boolean, defaults to TRUE).</dd>

</dl>

A function to boxplot 'score' column of a BED dataframe,
per unique chromosome name in the 'chrom' column. The resulting plot also highlights outliers
based on the inter quartile range (IQR). The genome wide median is plotted as a pink line through the boxplots.

plotBed: A function to boxplot 'score' column of a BED dataframe, per unique chromosome name in the 'chrom' column. The resulting plot also highlights outliers based on the inter quartile range (IQR). The genome wide median is plotted as a pink line through the boxplots.

Description

Usage

Arguments

Examples