plotCoverage

A function to scatterplot 'score' column of a BED dataframe
plotCoverage function plots values in the 'score' column of the supplied bed dataframe as a function of
chromosome coordinates. The genome wide median is plotted as a pink line.

scatterplot

Bioinformatics

genomics

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

plotCoverage function

<dl><dt>bed</dt>
<dd>A dataframe containing 'score','chrom','chromStart' and 'chromEnd' columns (dataframe).</dd>
<dt>region</dt>
<dd>Only plot for the provided region in the format 'chrI:1000-3000' (string, optional).</dd>
<dt>plotting</dt>
<dd>Should the plot object be sent to the default device? (boolean, defaults to TRUE).</dd></dl>

Arguments

A function to scatterplot 'score' column of a BED dataframe
plotCoverage function plots values in the 'score' column of the supplied bed dataframe as a function of
chromosome coordinates. The genome wide median is plotted as a pink line. — plotCoverage

<dl>

<dt>bed</dt>
<dd>A dataframe containing 'score','chrom','chromStart' and 'chromEnd' columns (dataframe).</dd>


<dt>region</dt>
<dd>Only plot for the provided region in the format 'chrI:1000-3000' (string, optional).</dd>


<dt>plotting</dt>
<dd>Should the plot object be sent to the default device? (boolean, defaults to TRUE).</dd>

</dl>

A function to scatterplot 'score' column of a BED dataframe
plotCoverage function plots values in the 'score' column of the supplied bed dataframe as a function of
chromosome coordinates. The genome wide median is plotted as a pink line.

plotCoverage: A function to scatterplot 'score' column of a BED dataframe plotCoverage function plots values in the 'score' column of the supplied bed dataframe as a function of chromosome coordinates. The genome wide median is plotted as a pink line.

Description

Usage

Arguments

Examples