trimRatio

A function to remove outliers from the "ratio" column of a supplied ratio dataframe
trimRatio is applied to the calculated ratio of read counts from a replicating to
a non-replicating samples.

Bioinformatics

replication

genomics

Create, Plot and Compare Replication Timing Profiles. The method is described in Muller et al., (2014) <doi: 10.1093/nar/gkt878>.

Dzmitry Batrakou

Repliscope

Replication Timing Profiling using DNA Copy Number

trimRatio function

<dl><dt>ratioDF</dt>
<dd>A ratio dataframe containing 'ratio' column (dataframe, required).</dd>
<dt>loLim</dt>
<dd>Low limit threshold (double, required).</dd>
<dt>hiLim</dt>
<dd>High limit threshold (double, required).</dd></dl>

Arguments

A function to remove outliers from the "ratio" column of a supplied ratio dataframe
trimRatio is applied to the calculated ratio of read counts from a replicating to
a non-replicating samples. — trimRatio

<dl>

<dt>ratioDF</dt>
<dd>A ratio dataframe containing 'ratio' column (dataframe, required).</dd>


<dt>loLim</dt>
<dd>Low limit threshold (double, required).</dd>


<dt>hiLim</dt>
<dd>High limit threshold (double, required).</dd>

</dl>

A function to remove outliers from the "ratio" column of a supplied ratio dataframe
trimRatio is applied to the calculated ratio of read counts from a replicating to
a non-replicating samples.

trimRatio: A function to remove outliers from the "ratio" column of a supplied ratio dataframe trimRatio is applied to the calculated ratio of read counts from a replicating to a non-replicating samples.

Description

Usage

Arguments

Examples