RefDbcache

The metabolic pathway data contains KOs, substrates and products, as well as a constructed reference global network

An implementation of the reverse ecology framework. Reverse ecology
    refers to the use of genomics to study ecology with no a priori assumptions 
    about the organism(s) under consideration, linking organisms to their
    environment. It allows researchers to reconstruct the metabolic networks and
    study the ecology of poorly characterized microbial species from their 
    genomic information, and has substantial potentials for microbial community 
    ecological analysis.

Yang Cao

RevEcoR

Reverse Ecology Analysis on Microbiome

RefDbcache function

The format is:
List of 7
  KO, substrate, product, user, date, version, reference network 
                                                                                                                                                                         :

RefDbcache: Reference data for global metabolic construction

Description

Usage

Arguments

format

Examples