Rga4gh (version 0.1.1)

search_expression_levels: Search for Expression Levels

Description

Search for Expression Levels

Usage

search_expression_levels(client, rna_quantification_id = NULL, feature_ids = NULL, threshold = NULL, page_size = NULL, page_token = NULL)

Arguments

client

A ga4gh_client object

rna_quantification_id

The ID of the RNA Quantification to search within

feature_ids

A list of Feature IDs. Only return expressions with any of the specified feature_ids.

threshold

Number

page_size

Specifies the maximum number of results to return in a single page. If unspecified, the client default will be used.

page_token

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of nextPageToken from the previous response.

Examples

ref_client <- ga4gh_client("http://1kgenomes.ga4gh.org", api_location = "")

## Not run: 
# 
# library(magrittr)
# ## Find a dataset to search in
# datasets <- ref_client %>% search_datasets() %>% content()
# d_id <- datasets$datasets[[1]]$id
# 
# ## Find an rna quantification set to search in
# rna_quantification_sets <- ref_client %>%
#  search_rna_quantification_sets(d_id) %>% content()
# rqs_id <- rna_quantification_sets$rnaQuantificationSets[[1]]$id
# 
# ## Find an rna quantification to search in
# rna_quantifications <- ref_client %>%
#  search_rna_quantifications(rqs_id) %>% content()
# rq_id <- rna_quantifications$rnaQuantifications[[1]]$id
# 
# ## Search for expression levels in the rna quantification
# expression_levels <- ref_client %>%
#  search_expression_levels(rq_id) %>% content()
# expression_levels
# 
# ## End(Not run)