drawable.list

Produces a <code>drawable.list</code> object, for <code>tk.browse</code> and <code>browsePlot</code> input.

Classes and methods to efficiently handle (slice, annotate, draw ...) genomic features (such as genes or transcripts), and an interactive interface to browse them. Performances and main features are highlighted in Mareschal et al (2014) <doi:10.1093/bioinformatics/btu185>.

Sylvain Mareschal

The R Genome Browser

drawable.list function

<dl> <dt>files</dt>
<dd>Character vector, path and names of the files holding the drawables object (with .rdt or .rds extensions, see <code>saveRDT</code> and <code><a href="/link/saveRDS?package=Rgb&version=1.7.5" data-mini-rdoc="Rgb::saveRDS">saveRDS</a></code> for further details). Can contain <code>NA</code> values, but providing a path allows updates to be saved.</dd> <dt>objects</dt>
<dd>List of <code>drawable</code>-inheriting objects to include in the list. If <code>NULL</code>, objects will be extracted from <code>files</code>, else a list with as many elements as <code>files</code> is required.</dd> <dt>hidden</dt>
<dd>Logical vector, whether to show tracks in <code>tk.browse</code> and <code>browsePlot</code> or not (this choice is not definitive). Recycled if necessary.</dd> <dt>warn</dt>
<dd>Single logical value, to be passed to the appropriate <code>check</code> method.</dd></dl>

Arguments

Author

Drawable list constructor — drawable.list

<dl>

 <dt>files</dt>
<dd>Character vector, path and names of the files holding the drawables object (with .rdt or .rds extensions, see <code>saveRDT</code> and <code><a href='https://rdrr.io/r/base/readRDS.html'>saveRDS</a></code> for further details). Can contain <code>NA</code> values, but providing a path allows updates to be saved.</dd>

 <dt>objects</dt>
<dd>List of <code>drawable</code>-inheriting objects to include in the list. If <code>NULL</code>, objects will be extracted from <code>files</code>, else a list with as many elements as <code>files</code> is required.</dd>

 <dt>hidden</dt>
<dd>Logical vector, whether to show tracks in <code>tk.browse</code> and <code>browsePlot</code> or not (this choice is not definitive). Recycled if necessary.</dd>

 <dt>warn</dt>
<dd>Single logical value, to be passed to the appropriate <code>check</code> method.</dd>

</dl>

drawable.list: Drawable list constructor

Description

Usage

Value

Arguments

Author

See Also