"track.genes"
This class is a variation of the track.table
class dedicated to genes, enforcing new drawing parameter defaults and a few specialized methods.
Objects can be created by two distincts means :
Using the corresponding constructors, which work like the track.table
constructor.
Importing a track.table
object in an empty object created by a call to new (see Examples).
Sylvain Mareschal
Class track.table
, directly.
Class refTable
, by class track.table
, distance 2.
Class crossable
, by class track.table
, distance 2.
Class sliceable
, by class track.table
, distance 3.
Class drawable
, by class track.table
, distance 4.
All reference classes extend and inherit methods from envRefClass
.
The following fields are inherited (from the corresponding class):
assembly (track.table)
checktrack (track.table)
colCount (refTable)
colIterator (refTable)
colNames (refTable)
colReferences (refTable)
index (track.table)
name (drawable)
organism (track.table)
parameters (drawable)
rowCount (refTable)
rowNamed (refTable)
rowNames (refTable)
sizetrack (track.table)
subtrack (track.table)
values (refTable)
The following methods are inherited (from the corresponding class):
addArms (track.table)
addColumn (track.table)
addDataFrame (refTable)
addEmptyRows (refTable)
addList (track.table)
addVectors (refTable)
buildCalls (track.table)
buildGroupPosition (track.table)
buildGroupSize (track.table)
buildIndex (track.table)
callParams (drawable)
callSuper (envRefClass)
check (track.table)
chromosomes (track.table)
coerce (track.table)
colOrder (refTable)
copy (refTable)
cross (crossable)
defaultParams (track.table)
delColumns (track.table)
draw (sliceable)
erase (refTable)
eraseArms (track.table)
export (envRefClass)
extract (refTable)
field (envRefClass)
fill (track.table)
fix.param (drawable)
getChromEnd (track.table)
getClass (envRefClass)
getColCount (refTable)
getColNames (refTable)
getLevels (refTable)
getName (drawable)
getParam (drawable)
getRefClass (envRefClass)
getRowCount (refTable)
getRowNames (refTable)
import (envRefClass)
indexes (refTable)
initFields (envRefClass)
initialize (track.table)
isArmed (track.table)
metaFields (track.table)
rowOrder (track.table)
segMerge (track.table)
segOverlap (track.table)
setColNames (track.table)
setLevels (track.table)
setName (drawable)
setParam (drawable)
setRowNames (refTable)
show (track.table, overloaded)
size (track.table)
slice (track.table)
trace (envRefClass)
types (refTable)
untrace (envRefClass)
usingMethods (envRefClass)
track.table-class
, track.table
, track.table.GTF
track.genes
, track.genes.NCBI