check_gtf

This function tests consistency and order of a GTF file.
Optionally, can fix some of the consistency errors and sort the GTF file.

internal

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Juan Antonio Garcia-Martin

Rgff

R Utilities for GFF Files

Juan Carlos Oliveros

Rafael Torres-Perez

check_gtf function

<dl><dt>gtfFile</dt>
<dd>Path to the input GTF file</dd></dl>

Arguments

Test consistency and order of a GTF file — check_gtf

<dl>

<dt>gtfFile</dt>
<dd>Path to the input GTF file</dd>

</dl>

check_gtf: Test consistency and order of a GTF file

Description

Usage

Value

Arguments